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Fundam. Prikl. Mat., 2015, Volume 20, Issue 3, Pages 33–46 (Mi fpm1651)  

Analyzing the data bank of proteins' space structures (PDB): a geometrical approach

E. A. Vilkul, A. O. Ivanov, A. S. Mishchenko, Th. Yu. Popelenskii, A. A. Tuzhilin, K. V. Shaytan

Lomonosov Moscow State University

Abstract: A geometrical approach to the analysis of a data bank containing information on space structures of proteins is suggested. As a result of the analysis, several relationships concerning possible conformations are found, and also there is obtained a list of polypeptides whose structures differ essentially from typical concepts of the 3D-structure of proteins. Those deviations could indicate possible errors and gaps of the interpreting models in use, as well as some new unknown relations and rules.

Funding Agency Grant Number
Russian Science Foundation 14-50-00029


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English version:
Journal of Mathematical Sciences (New York), 2017, 225:4, 555–564

Bibliographic databases:

UDC: 514.8+51-76+57.087

Citation: E. A. Vilkul, A. O. Ivanov, A. S. Mishchenko, Th. Yu. Popelenskii, A. A. Tuzhilin, K. V. Shaytan, “Analyzing the data bank of proteins' space structures (PDB): a geometrical approach”, Fundam. Prikl. Mat., 20:3 (2015), 33–46; J. Math. Sci., 225:4 (2017), 555–564

Citation in format AMSBIB
\Bibitem{VilIvaMis15}
\by E.~A.~Vilkul, A.~O.~Ivanov, A.~S.~Mishchenko, Th.~Yu.~Popelenskii, A.~A.~Tuzhilin, K.~V.~Shaytan
\paper Analyzing the data bank of proteins' space structures (PDB): a~geometrical approach
\jour Fundam. Prikl. Mat.
\yr 2015
\vol 20
\issue 3
\pages 33--46
\mathnet{http://mi.mathnet.ru/fpm1651}
\mathscinet{http://www.ams.org/mathscinet-getitem?mr=3519746}
\elib{http://elibrary.ru/item.asp?id=30012480}
\transl
\jour J. Math. Sci.
\yr 2017
\vol 225
\issue 4
\pages 555--564
\crossref{https://doi.org/10.1007/s10958-017-3477-2}


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  • Фундаментальная и прикладная математика
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