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Mat. Biolog. Bioinform., 2012, Volume 7, Issue 2, Pages 567–571 (Mi mbb123)  

Bioinformatics

Elements of RNA Secondary Structures and Their Classification

E. F. Baulinab, T. V. Astakhovaa, M. A. Roytberga

a Institute of mathematical problems in biology RAS, 4 Institutskaya, Pushchino, Moscow Region, 142290, Russia
b National Research University Higher School of Economics, 20 Myasnitskaya Ulitsa, Moscow, 101000, Russia

Abstract: A classification of elements of RNA secondary structure is proposed; the classification generalizes the loop classification given by Mathews and Turner. The classification allows one to describe both hpdeudoknot-free, and psedoknotted structures.

Key words: RNA, secondary structure, helix, pseudoknot, loop.

Full text: PDF file (289 kB)
References: PDF file   HTML file
UDC: 577.214.5
Received 22.10.2012, Published 26.10.2012

Citation: E. F. Baulin, T. V. Astakhova, M. A. Roytberg, “Elements of RNA Secondary Structures and Their Classification”, Mat. Biolog. Bioinform., 7:2 (2012), 567–571

Citation in format AMSBIB
\Bibitem{BauAstRoi12}
\by E.~F.~Baulin, T.~V.~Astakhova, M.~A.~Roytberg
\paper Elements of RNA Secondary Structures and Their Classification
\jour Mat. Biolog. Bioinform.
\yr 2012
\vol 7
\issue 2
\pages 567--571
\mathnet{http://mi.mathnet.ru/mbb123}


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