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2012, Volume 7, Issue 2  


Mathematical Modeling
A review of computational models of neuronal cultures in vitro
Konstantin V. Anokhin, Mikhail S. Burtsev, Viachesav A. Ilyin, Ilya I. Kiselev, Konstantin A. Kukin, Konstantin V. Lakhman, Alexander V. Paraskevov, Roman B. Rybka, Alexander G. Sboev, Nikolay V. Tverdokhlebov
372
Agent-Based Models: Approaches and Applicability to Epidemiology
Konstantin K. Avilov, Oleg Yu. Solovey
425
RISM integral equation theory in study of thermodynamics of self-assembling ionic peptides
E. V. Sobolev, A. V. Danilkovich, D. A. Tikhonov
493
Mathematical Modeling of Photosynthetic Electron Transport Chain Considering Spatial Heterogeneity of the Thylakoid Membrane
S. S. Makarov, E. A. Grachev, T. K. Antal
508
Experimental model of neuronal network learning in dissociated hippocampal cultures
A. S. Pimashkin, A. A. Gladkov, I. V. Mukhina, M. S. Burtsev, V. A. Ilyin, V. B. Kazantsev
545
A Mathematical Model for Evolution of Human Functional Disorders Influenced by Environment Factors
Petr V. Trusov, Nina V. Zaitseva, Dmitriy A. Kiryanov, Marat R. Kamaltdinov, Mihail Ju. Cinker, Vladimir M. Chigvintsev, Dmitriy V. Lanin
589
Models of Control and Spread of HIV-infection
Ekaterina Nosova
632
The Model of Interaction Between Learning and Evolutionary Optimization
Vladimir G. Red'ko
676
The Use of Refmac Crystallographic Refinement Program for Detection of Alternative Conformations in Biological Macromolecules
Oleg V. Sobolev, Vladimir Yu. Lunin
692
Modular Modeling of the Human Cardiovascular System
I. N. Kiselev, B. V. Semisalov, E. A. Biberdorf, R. N. Sharipov, A. M. Blokhin, F. A. Kolpakov
703

Bioinformatics
L-MOLKERN: a Simulation Package for Polarizable Free-Energy Calculations
Eduard S. Fomin, Nikolay A. Alemasov
398
Informational Support of the Breeding Experiment in Wheat in the WheatPGE System
M. A. Genaev, A. V. Doroshkov, T. A. Pshenichnikova, E. V. Morozova, A. V. Simonov, D. A. Afonnikov
410
TGP — the Database on Promoters for Plant Transgenesis
Olga G. Smirnova, Dmitriy A. Rasskazov, Dmitriy A. Afonnikov, Alexey V. Kochetov
444
Searching Pair Points of Triplet Periodicity Phase Shifts in the Genes of 17 Bacterial Genomes
Valentina M. Pugacheva, Alexander E. Korotkov, Eugene V. Korotkov
461
Search for Extended Repeats in Genomes Based on the Spectral-Analytical Method
Anton Pankratov, Maxim Pyatkov, Ruslan Tetuev, Nafisa Nazipova, Florents F. Dedus
476
Elements of RNA Secondary Structures and Their Classification
E. F. Baulin, T. V. Astakhova, M. A. Roytberg
567
The Application of Model Reduction Methods to the Construction of the Composite Model of Apoptotic Pathways
Elena O. Kutumova, Andrey Y. Zinovyev, Ruslan N. Sharipov, Fedor A. Kolpakov
572
Comparative Analysis of Individual Domains of Hoc Proteins in Subfamily Teequatrovirinae Bacteriophages
Andrey A. Zimin, Galina V. Mikoulinskaia, Lira F. Nigmatullina, Nafisa N. Nazipova
611

Intellectual Analisys of Data
Setting Up the Nonlinear Model of Experimental Data From DNA Microarrays
E. A. Riabenko
554

Information and Computer Technologies in Biology and Medicine
Development of Information and Communication Technologies in Pushchino Research Center of the Russian Academy of Sciences
V. D. Lakhno, E. A. Isaev, V. D. Pugachev, A. Yu. Zaitsev, N. S. Fialko, S. D. Rykunov, M. N. Ustinin
529
 
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