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Numerical methods and programming, 2006, Volume 7, Issue 4, Pages 310–322 (Mi vmp607)  

Вычислительные методы и приложения

Entropic sampling of freely-rotating polymer chains

A. A. Yurchenko, P. N. Vorontsov-Velyaminov

Saint Petersburg State University
Abstract: In this paper we discuss some simulation results of freely-rotating models for polymer chains. Computer modeling was carried out by Monte Carlo methods within the Wang-Landau algorithm. For models of n-alkanes and polypeptides (polyglycines), distribution energy functions were obtained. They allowed us to calculate canonical values of internal energy, heat capacity and excess entropy, average radius of inertia, and end-to-end distance. For n-alkanes we used parameters of the OPLS force field, whereas for polyglycines we used parameters of the CHARMM force field.
Keywords: Monte-Carlo methods, simulation, Wang-Landau algorithm, polymers, polypeptides, thermodynamics, force field.
Document Type: Article
UDC: 537.213
Language: Russian
Citation: A. A. Yurchenko, P. N. Vorontsov-Velyaminov, “Entropic sampling of freely-rotating polymer chains”, Num. Meth. Prog., 7:4 (2006), 310–322
Citation in format AMSBIB
\Bibitem{YurVor06}
\by A.~A.~Yurchenko, P.~N.~Vorontsov-Velyaminov
\paper Entropic sampling of freely-rotating polymer chains
\jour Num. Meth. Prog.
\yr 2006
\vol 7
\issue 4
\pages 310--322
\mathnet{http://mi.mathnet.ru/vmp607}
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