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Numerical methods and programming, 2006, Volume 7, Issue 4, Pages 310–322
(Mi vmp607)
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Вычислительные методы и приложения
Entropic sampling of freely-rotating polymer chains
A. A. Yurchenko, P. N. Vorontsov-Velyaminov Saint Petersburg State University
Abstract:
In this paper we discuss some simulation results of freely-rotating models for polymer chains. Computer modeling was carried out by Monte Carlo methods within the Wang-Landau algorithm. For models of n-alkanes and polypeptides (polyglycines), distribution energy functions were obtained. They allowed us to calculate canonical values of internal energy, heat capacity and excess entropy, average radius of inertia, and end-to-end distance. For n-alkanes we used parameters of the OPLS force field, whereas for polyglycines we used parameters of the CHARMM force field.
Keywords:
Monte-Carlo methods, simulation, Wang-Landau algorithm, polymers, polypeptides, thermodynamics, force field.
Citation:
A. A. Yurchenko, P. N. Vorontsov-Velyaminov, “Entropic sampling of freely-rotating polymer chains”, Num. Meth. Prog., 7:4 (2006), 310–322
Linking options:
https://www.mathnet.ru/eng/vmp607 https://www.mathnet.ru/eng/vmp/v7/i4/p310
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| Statistics & downloads: |
| Abstract page: | 131 | | Full-text PDF : | 60 | | References: | 3 |
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