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Nanosystems: Physics, Chemistry, Mathematics, 2013, Volume 4, Issue 2, Pages 225–235 (Mi nano753)  

Stepwise conformation transitions for a semi-stiff ring polymer confined in a conical trap induced by the increasing external field or by cone's opening angle variation

A. Siretskiya, C. Elvingsonb, P. N. Vorontsov-Velyaminovc

a Dept. of Informational Technology, SE-751 05, Uppsala University, Uppsala, Sweden
b Dept. of Chemistry, Physical Chemistry P.O. Box 523, SE-751 20, Uppsala University, Uppsala, Sweden
c Dept. of Molecular Biophysical, Physical Faculty, 198504, Saint Petersburg University, Saint-Petersburg, Russia
Abstract: In this paper a stepwise compaction process of a ring semi-stiff polymer chain placed in a 3d conical nano-cavity and being under the action of the increasing external field is studied. Compaction from a circle-like shape to several toroidal-like loops for a three-dimensional system was observed. The thermodynamic stability of these toroidal-like structures was investigated by observing a hysteresis of the compaction-extension curves. This study extends our previous work [1] with investigation of the effect of the cone opening angle variation on the distinct shape transitions.
Keywords: semi-stiff ring polymers, Monte Carlo, compact structures, shape transitions, confinement, nanocone.
Bibliographic databases:
Document Type: Article
PACS: 05.10.Ln 05.20.Gg 87.15.A- 64.60.De
Language: English
Citation: A. Siretskiy, C. Elvingson, P. N. Vorontsov-Velyaminov, “Stepwise conformation transitions for a semi-stiff ring polymer confined in a conical trap induced by the increasing external field or by cone's opening angle variation”, Nanosystems: Physics, Chemistry, Mathematics, 4:2 (2013), 225–235
Citation in format AMSBIB
\Bibitem{SirElvVor13}
\by A.~Siretskiy, C.~Elvingson, P.~N.~Vorontsov-Velyaminov
\paper Stepwise conformation transitions for a semi-stiff ring polymer confined in a conical trap induced by the increasing external field or by cone's opening angle variation
\jour Nanosystems: Physics, Chemistry, Mathematics
\yr 2013
\vol 4
\issue 2
\pages 225--235
\mathnet{http://mi.mathnet.ru/nano753}
\elib{https://elibrary.ru/item.asp?id=18964075 }
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