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Program Systems: Theory and Applications, 2017, Volume 8, Issue 2, Pages 45–68
DOI: https://doi.org/10.25209/2079-3316-2017-8-2-45-68
(Mi ps262)
 

This article is cited in 1 scientific paper (total in 1 paper)

Hardware, software and distributed supercomputer systems

Computer tools for analysis of transcriptomics data: program complex ExpGene

A. M. Spitsinaa, A. O. Braginb, A. I. Dergileva, I. V. Chadaevab, N. N. Tverdokhlebb, E. R. Galievab, L. E. Tabikhanovab, Yu. L. Orlovb

a Novosibirsk State University
b Institute of Cytology and Genetics SB RAS
References:
Abstract: High-performance DNA sequencing technologies allow to obtain gene expression data in the genome scale from microchips and transcriptome profiling.
It is necessary to develop new computational methods, based on supercomputer technologies, to analyze such data. The problems of gene expression analysis in the context of computational complexity are considered. We present application examples of the multifunctional software package ExpGene for analysis and visualization of transcriptomics and microarray data. We consider examples of analysis of laboratory animal brain areas gene expression data. (In Russian).
Key words and phrases: bioinformatics, program complex, DNA sequencing, transcriptome, gene expression, microarrays, databases.
Received: 17.04.2017
Accepted: 15.05.2017
Document Type: Article
UDC: 57.05; 004.031.2
Language: Russian
Citation: A. M. Spitsina, A. O. Bragin, A. I. Dergilev, I. V. Chadaeva, N. N. Tverdokhleb, E. R. Galieva, L. E. Tabikhanova, Yu. L. Orlov, “Computer tools for analysis of transcriptomics data: program complex ExpGene”, Program Systems: Theory and Applications, 8:2 (2017), 45–68
Citation in format AMSBIB
\Bibitem{SpiBraDer17}
\by A.~M.~Spitsina, A.~O.~Bragin, A.~I.~Dergilev, I.~V.~Chadaeva, N.~N.~Tverdokhleb, E.~R.~Galieva, L.~E.~Tabikhanova, Yu.~L.~Orlov
\paper Computer tools for analysis of transcriptomics data: program complex ExpGene
\jour Program Systems: Theory and Applications
\yr 2017
\vol 8
\issue 2
\pages 45--68
\mathnet{http://mi.mathnet.ru/ps262}
\crossref{https://doi.org/10.25209/2079-3316-2017-8-2-45-68}
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  • https://www.mathnet.ru/eng/ps262
  • https://www.mathnet.ru/eng/ps/v8/i2/p45
  • This publication is cited in the following 1 articles:
    Citing articles in Google Scholar: Russian citations, English citations
    Related articles in Google Scholar: Russian articles, English articles
    Program Systems: Theory and Applications
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